Knowseq
WebApr 13, 2024 · DOI: 10.1016/j.compbiomed.2024.104387 Corpus ID: 233311696; KnowSeq R-Bioc package: The automatic smart gene expression tool for retrieving relevant biological knowledge @article{CastilloSecilla2024KnowSeqRP, title={KnowSeq R-Bioc package: The automatic smart gene expression tool for retrieving relevant biological knowledge}, … Web‘KnowSeq’ R Package includes all the essential tools to carry out transcriptomic analysis, providing intuitive functions to build efficient and robust pipelines. In this paper, its …
Knowseq
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WebKnowSeq is available through Bioconductor. Conclusions: KnowSeq R/bioc package is born with the purpose of providing an integrative tool, containing the necessary steps to address complex RNA-seq analyses in a modular and flexible way. In this paper a breast study case is addressed with KnowSeq, obtaining outstanding results and demonstrating the Web‘KnowSeq’ R Package includes all the essential tools to carry out transcriptomic analysis, providing intuitive functions to build efficient and robust pipelines. In this paper, its capacities are demonstrated in a practical COVID-19 biomarkers detection problem using RNA-Sequencing data. Through Machine Learning techniques such as feature selection …
WebApr 16, 2024 · In KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline. Description Usage Arguments Value Examples. View source: R/DEGsEvidences.R. Description. DEGsEvidences function returns for each DEG a list of evidences that correlate it with the studied disease. Usage WebLogseq is a joyful, open-source outliner that works on top of local plain-text Markdown and Org-mode files. Use it to write, organize and share your thoughts, keep your to-do list, and …
WebApr 16, 2024 · In KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline. Description Usage Arguments Value Examples. View source: R/hisatAlignment.R. Description. This function allows downloading and processing the fastq samples in a CSV file by using hisat2 aligner. This funtion is used internally by rawAlignment but it can be …
WebKnowSeq proposes a novel methodology that comprises the most relevant steps in the Transcriptomic gene expression analysis. KnowSeq expects to serve as an integrative … mary wollstonecraft ideologyWebApr 16, 2024 · batchEffectRemoval: Corrects the batch effect of the data by using the selected... calculateGeneExpressionValues: Calculates the gene expression values by using a matrix of... countsToMatrix: countsToMatrix merges in a matrix the information in the... dataPlot: Plot different graphs depending on the current step of... DEGsEvidences: … mary wollstonecraft historical significanceWebKnowSeq is an intelligent, powerful, scalable and modular gene expression pipeline. • The use of Machine Learning to assess biomarkers helps to find candidate gene signatures. • … hvac tech tool kitWebKnowSeq R/bioc package: Beyond the traditional RNA-seq pipeline. Current build status. release; development; Introduction. KnowSeq proposes a novel methodology that … hvac telecommunicationsWeb‘KnowSeq’ R Package includes all the essential tools to carry out transcriptomic analysis, providing intuitive functions to build efficient and robust pipelines, and its capacities are … mary wollstonecraft how did she dieWebApr 16, 2024 · In KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline. Description Usage Arguments Value Examples. View source: R/sraToFastq.R. Description. This function downloads and converts the sra files to fastq files by using the URLs indicated through the identifier argument. hvac tech tool catalogWebApr 10, 2024 · Kernel-based machine learning methods for classification, regression, clustering, novelty detection, quantile regression and dimensionality reduction. Among other methods 'kernlab' includes Support Vector Machines, Spectral Clustering, Kernel PCA, Gaussian Processes and a QP solver. mary wollstonecraft history.com